PlantTFDB
Plant Transcription Factor Database
v3.0
Center for Bioinformatics, Peking University, China Previous versions:v1.0 v2.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl001431
Organism
Taxonomic ID
Taxonomic Lineage
Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Coniferophyta; Coniferopsida; Coniferales; Pinaceae; Picea
Family NF-X1
Protein Properties Length: 738aa    MW: 81039.2 Da    PI: 7.7721
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-30647PU_refplantGDBView CDS
gnl|UG|Pgl#S55346898PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.68.2e-062845118
   zf-NF-X1  1 CGkHkCqklCHeGpCppC 18
               C +HkC+k+CH+G+C++C
  Pgl001431 28 CQNHKCSKICHPGECGEC 45
               448*************** PP

2zf-NF-X1171.3e-0586103118
   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                CGkH C+ +CH G+CppC
  Pgl001431  86 CGKHLCINTCHQGECPPC 103
                ****************** PP

3zf-NF-X118.83.6e-06187205119
   zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                CGkH Cq+lCH G CppC 
  Pgl001431 187 CGKHFCQELCHSGHCPPCL 205
                ******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PANTHERPTHR12360:SF01.6e-21722653No hitNo description
PANTHERPTHR123601.6e-21722653No hitNo description
SMARTSM004380.00132847IPR000967Zinc finger, NF-X1-type
SMARTSM004380.007686105IPR000967Zinc finger, NF-X1-type
SMARTSM004382.7e+02147183IPR000967Zinc finger, NF-X1-type
SMARTSM004384.8e-05187206IPR000967Zinc finger, NF-X1-type
SMARTSM004380.45244262IPR000967Zinc finger, NF-X1-type
SMARTSM004380.12297329IPR000967Zinc finger, NF-X1-type
SMARTSM004380.049338359IPR000967Zinc finger, NF-X1-type
PfamPF014240.00019451514IPR001374Single-stranded nucleic acid binding R3H
PROSITE profilePS510619.212451516IPR001374Single-stranded nucleic acid binding R3H
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-dependent
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functionsequence-specific DNA binding transcription factor activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
GDMEIQGEID WKNGVLHVKN LCMKMLSCQN HKCSKICHPG ECGECELSPG KVKSCPCGKT  60
QLQNQRKSCM DSVPTCSEVC EKLLPCGKHL CINTCHQGEC PPCLVSVNKK CRCGSSSQTV  120
PCWKTMVSVE ENDEFTCEKS CGQKKNCGRH RCSERCCPLA NRGGSITLSG DWDPHLCQMS  180
CGKKLQCGKH FCQELCHSGH CPPCLETIFS DLSCACGKTS IPPPVPCGTP IPPCLFPCSI  240
PQPCGHLASH DCHFGECPPC TVPVAKECVG SHVVLKNVPC GSRDIRCNKL CGNTRQCGMH  300
ACTRTCHLPP CDSVSMENSS SVARISCGQL CGSPRRDCRH TCTASCHPSI PCPDTRCELL  360
VTITCSCGRL TAKVPVMLEA SDLIQPVQSN SNRVPLGQRK LACDDECTKL EKKKILADAF  420
GICTTIDLPG VSEQISELLA ELIRREPQWV SAVEERFRYL VLGKTKASSN SIRVHVFGPM  480
PKDKRDMLRH LAERWSLFIY SAGWEPKRFL IIQATQKSRA PVRSIMPKGS LPTIGLVQPP  540
PFNSVVDMDP RLVLALFDLP REAEVSSLIL RFGGECELVW LNDKNALAIF TDPARAATAL  600
RRVDHASVYR GAIVVPHNGG LPNRNAWATK DGTAEKANAW KKNEQQTVWM EDSWGEDWSS  660
AEVSKPVWQF KKNPIATTRN PYGALEKDNA GEACSSTSDV QPSSKPLTTM GSIEVSSSQE  720
NQNKYSPSEV DDWEKVFD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.13150.0needle| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Query Start Query End Hit Start Hit End Description
SwissprotQ9SY590.017364271186NFXL1_ARATH NF-X1-type zinc finger protein NFXL1
TRANSFACT066760.017364271186At1g10170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1